Pyrrolobenzodiazepine (PBD) - CAS 945490-09-5

Pyrrolobenzodiazepine (PBD) - CAS 945490-09-5 Catalog number: BADC-01377

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Pyrrolobenzodiazepines are a class of natural products with antibiotic or anti-tumor properties. They are produced by various actinomycetes. As a class of DNA-crosslinking agents, pyrrolobenzodiazepines are significantly more potent than systemic chemotherapeutic drugs.

Category
ADCs Cytotoxin
Product Name
Pyrrolobenzodiazepine (PBD)
CAS
945490-09-5
Catalog Number
BADC-01377
Molecular Formula
C14H14N2O3
Molecular Weight
258.28
Pyrrolobenzodiazepine (PBD)

Ordering Information

Catalog Number Size Price Quantity
BADC-01377 -- $--
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Description
Pyrrolobenzodiazepines are a class of natural products with antibiotic or anti-tumor properties. They are produced by various actinomycetes. As a class of DNA-crosslinking agents, pyrrolobenzodiazepines are significantly more potent than systemic chemotherapeutic drugs.
Synonyms
Tomaymycin DM; SCHEMBL1744508; 945490-09-5; MS-23640; HY-102001; CS-0022442
IUPAC Name
(6aS)-3-hydroxy-2-methoxy-8-methylidene-7,9-dihydro-6aH-pyrrolo[2,1-c][1,4]benzodiazepin-11-one
Canonical SMILES
COC1=C(C=C2C(=C1)C(=O)N3CC(=C)CC3C=N2)O
InChI
InChI=1S/C14H14N2O3/c1-8-3-9-6-15-11-5-12(17)13(19-2)4-10(11)14(18)16(9)7-8/h4-6,9,17H,1,3,7H2,2H3/t9-/m0/s1
InChIKey
GXKVYHPROGIVCL-VIFPVBQESA-N
Appearance
Solid
Purity
> 95%
Quantity
Milligrams-Grams
Storage
store at -20°C, stored under nitrogen
1. Antistaphylococcal activity of DNA-interactive pyrrolobenzodiazepine (PBD) dimers and PBD-biaryl conjugates
Peter W Taylor, David E Thurston, Joao B Moreira, Keith R Fox, Denise E Waldron, Philip W Howard, Helena Rosado, Stephen J Gregson, Maria de la Fuente, Eva Stecher, Eva-Anne Feuerbaum, Khondaker M Rahman, Colin H James J Antimicrob Chemother . 2012 Jul;67(7):1683-96. doi: 10.1093/jac/dks127.
Objectives:Pyrrolobenzodiazepine (PBD) dimers, tethered through inert propyldioxy or pentyldioxy linkers, possess potent bactericidal activity against a range of Gram-positive bacteria by virtue of their capacity to cross-link duplex DNA in sequence-selective fashion. Here we attempt to improve the antibacterial activity and cytotoxicity profile of PBD-containing conjugates by extension of dimer linkers and replacement of one PBD unit with phenyl-substituted or benzo-fused heterocycles that facilitate non-covalent interactions with duplex DNA.Methods:DNase I footprinting was used to identify high-affinity DNA binding sites. A staphylococcal gene microarray was used to assess epidemic methicillin-resistant Staphylococcus aureus 16 phenotypes induced by PBD conjugates. Molecular dynamics simulations were employed to investigate the accommodation of compounds within the DNA helix.Results:Increasing the length of the linker in PBD dimers led to a progressive reduction in antibacterial activity, but not in their cytotoxic capacity. Complex patterns of DNA binding were noted for extended PBD dimers. Modelling of DNA strand cross-linking by PBD dimers indicated distortion of the helix. A majority (26 of 43) of PBD-biaryl conjugates possessed potent antibacterial activity with little or no helical distortion and a more favourable cytotoxicity profile. Bactericidal activity of PBD-biaryl conjugates was determined by inability to excise covalently bound drug molecules from bacterial duplex DNA.Conclusions:PBD-biaryl conjugates have a superior antibacterial profile compared with PBD dimers such as ELB-21. We have identified six PBD-biaryl conjugates as potential drug development candidates.
2. ADCT-402, a PBD dimer-containing antibody drug conjugate targeting CD19-expressing malignancies
Peter C Tyrer, Simon Chivers, Konstantinos Kiakos, Teresa Marafioti, Charles E Britten, Francois D'Hooge, David G Williams, Arnaud Tiberghien, John A Hartley, Francesca Zammarchi, Philip W Howard, Simon Corbett, Narinder Janghra, Carin E G Havenith, Patrick H van Berkel, Lauren Adams Blood . 2018 Mar 8;131(10):1094-1105. doi: 10.1182/blood-2017-10-813493.
Human CD19 antigen is a 95-kDa type I membrane glycoprotein in the immunoglobulin superfamily whose expression is limited to the various stages of B-cell development and differentiation and is maintained in the majority of B-cell malignancies, including leukemias and non-Hodgkin lymphomas of B-cell origin. Coupled with its differential and favorable expression profile, CD19 has rapid internalization kinetics and is not shed into the circulation, making it an ideal target for the development of antibody-drug conjugates (ADCs) to treat B-cell malignancies. ADCT-402 (loncastuximab tesirine) is a novel CD19-targeted ADC delivering SG3199, a highly cytotoxic DNA minor groove interstrand crosslinking pyrrolobenzodiazepine (PDB) dimer warhead. It showed potent and highly targeted in vitro cytotoxicity in CD19-expressing human cell lines. ADCT-402 was specifically bound, internalized, and trafficked to lysosomes in CD19-expressing cells and, following release of the PBD warhead, resulted in formation of DNA crosslinks that persisted for 36 hours. Bystander killing of CD19-cells by ADCT-402 was also observed. In vivo, single doses of ADCT-402 resulted in highly potent, dose-dependent antitumor activity in several subcutaneous and disseminated human tumor models with marked superiority to comparator ADCs delivering tubulin inhibitors. Dose-dependent DNA crosslinks and γ-H2AX DNA damage response were measured in tumors by 24 hours after single dose administration, whereas matched peripheral blood mononuclear cells showed no evidence of DNA damage. Pharmacokinetic analysis in rat and cynomolgus monkey showed excellent stability and tolerability of ADCT-402 in vivo. Together, these impressive data were used to support the clinical testing of this novel ADC in patients with CD19-expressing B-cell malignancies.
3. BCMA-Specific ADC MEDI2228 and Daratumumab Induce Synergistic Myeloma Cytotoxicity via IFN-Driven Immune Responses and Enhanced CD38 Expression
Lijie Xing, Liang Lin, Krista Kinneer, Nikhil Munshi, Kenneth Wen, Shih-Feng Cho, Jiye Liu, Gang An, Kenneth C Anderson, Phillip A Hsieh, Lugui Qiu, Su Wang, Tengteng Yu, Yuyin Li, Yu-Tzu Tai, Hailin Chen Clin Cancer Res . 2021 Oct 1;27(19):5376-5388. doi: 10.1158/1078-0432.CCR-21-1621.
Purpose:Efforts are required to improve the potency and durability of CD38- and BCMA-based immunotherapies in human multiple myeloma. We here delineated the molecular and cellular mechanisms underlying novel immunomodulatory effects triggered by BCMA pyrrolobenzodiazepine (PBD) antibody drug conjugate (ADC) MEDI2228 which can augment efficacy of these immunotherapies.Experimental design:MEDI2228-induced transcriptional and protein changes were investigated to define significantly impacted genes and signaling cascades in multiple myeloma cells. Mechanisms whereby MEDI2228 combination therapies can enhance cytotoxicity or overcome drug resistance in multiple myeloma cell lines and patient multiple myeloma cells were defined using in vitro models of tumor in the bone marrow (BM) microenvironment, as well as in human natural killer (NK)-reconstituted NOD/SCID gamma (NSG) mice bearing MM1S tumors.Results:MEDI2228 enriched IFN I signaling and enhanced expression of IFN-stimulated genes in multiple myeloma cell lines following the induction of DNA damage-ATM/ATR-CHK1/2 pathways. It activated cGAS-STING-TBK1-IRF3 and STAT1-IRF1-signaling cascades and increased CD38 expression in multiple myeloma cells but did not increase CD38 expression in BCMA-negative NK effector cells. It overcame CD38 downregulation on multiple myeloma cells triggered by IL6 and patient BM stromal cell-culture supernatant via activation of STAT1-IRF1, even in immunomodulatory drug (IMiD)- and bortezomib-resistant multiple myeloma cells. In vitro and in vivo upregulation of NKG2D ligands and CD38 in MEDI2228-treated multiple myeloma cells was further associated with synergistic daratumumab (Dara) CD38 MoAb-triggered NK-mediated cytotoxicity of both cell lines and autologous drug-resistant patient multiple myeloma cells.Conclusions:These results provide the basis for clinical evaluation of combination MEDI2228 with Dara to further improve patient outcome in multiple myeloma.
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